AbstractRootedTree (JEBL2 lib API)

java.lang.Object

jebl.evolution.trees.AbstractRootedTree

All Implemented Interfaces:: Graph, RootedTree, Tree, Attributable

Direct Known Subclasses:: FilteredRootedTree, MutableRootedTree, ReRootedTree, RootedFromUnrooted, RootedSubtree

public abstract class AbstractRootedTree extends Object implements RootedTree

Version:: $
Author:: Andrew Rambaut

Nested Class Summary

Nested classes/interfaces inherited from interface Graph
Graph.NoEdgeException, Graph.Utils
Constructor Summary

Constructors

Constructor

Description

AbstractRootedTree()
Method Summary

Modifier and Type

Method

Description

int

getExternalNodeCount(Node node)

List<Node>

getExternalNodes(Node node)

Methods inherited from class Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface Attributable
getAttribute, getAttributeMap, getAttributeNames, removeAttribute, setAttribute

Methods inherited from interface Graph
getAdjacencies, getEdge, getEdgeLength, getEdges, getEdges, getNodes, getNodes, getNodes

Methods inherited from interface RootedTree
conceptuallyUnrooted, getChildren, getHeight, getLength, getParent, getRootNode, hasHeights, hasLengths, isHeightsKnown, isLengthsKnown, isRoot

Methods inherited from interface Tree
getExternalEdges, getExternalNodes, getInternalEdges, getInternalNodes, getNode, getTaxa, getTaxon, isExternal, renameTaxa

Constructor Details
- AbstractRootedTree
  
  public AbstractRootedTree()
Method Details
- getExternalNodeCount
  
  public int getExternalNodeCount(Node node)
  
  Specified by:
  
  getExternalNodeCount in interface RootedTree
- getExternalNodes
  
  public List<Node> getExternalNodes(Node node)
  
  Specified by:
  
  getExternalNodes in interface RootedTree
  
  Parameters:
  
  node - the node whose external nodes are being requested.
  
  Returns:
  
  the list of external nodes descendent of the given node. The set may be empty for a terminal node (a tip).