Class WAG

java.lang.Object
jebl.evolution.substmodel.AbstractRateMatrix
jebl.evolution.substmodel.AminoAcidModel
jebl.evolution.substmodel.WAG
All Implemented Interfaces:
Serializable, Cloneable, RateMatrix
public class WAG extends AminoAcidModel
WAG model of amino acid evolution (S. Whelan and N. Goldman 2000)
Version:
$Id: WAG.java 185 2006-01-23 23:03:18Z rambaut $
Author:
Korbinian Strimmer, Alexei Drummond
See Also:

  • Constructor Details

    • WAG

      public WAG(double[] f)
      constructor
      Parameters:
      f - amino acid frequencies

  • Method Details

    • getOriginalFrequencies

      public static void getOriginalFrequencies(double[] f)
      get the frequencies of the original data set that formed the basis for the estimation of the rate matrix
      Parameters:
      f - array where amino acid frequencies will be stored

    • getOriginalFrequencies

      public static double[] getOriginalFrequencies()
      Returns:
      the frequencies of the original data set that formed the basis for the estimation of the rate matrix

    • getUniqueName

      public String getUniqueName()
      Returns:
      a short unique human-readable identifier for this rate matrix.