Alignment (JEBL2 lib API)

All Superinterfaces:: Patterns, Sequences

All Known Implementing Classes:: BasicAlignment, BootstrappedAlignment, JackknifedAlignment, ResampledAlignment

public interface Alignment extends Sequences, Patterns

Version:: $Id: Alignment.java 314 2006-05-03 01:21:14Z alexeidrummond $
Author:: Andrew Rambaut, Alexei Drummond

Method Summary

Modifier and Type

Method

Description

List<Sequence>

getSequenceList()

int

getSiteCount()

Methods inherited from interface Patterns
getPatternCount, getPatternLength, getPatterns, getSequenceType, getTaxa

Methods inherited from interface Sequences
getSequence, getSequences

Method Details
- getSequenceList
  
  List<Sequence> getSequenceList()
- getSiteCount
  
  int getSiteCount()