Locus 4

Sequence ID hg18.chr11
Location 93,104,298 – 93,104,389
Length 91
Max. P 0.771915
window7

overview

Window 7

Location 93,104,298 – 93,104,389
Length 91
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.15
Mean single sequence MFE -20.73
Consensus MFE -17.72
Energy contribution -18.00
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -0.90
Structure conservation index 0.85
SVM decision value 0.53
SVM RNA-class probability 0.771915
Prediction RNA

Download alignment: ClustalW | MAF

>hg18.chr11 93104298 91 - 134452384
ACGAUGUUAUGAUGAUGGGCGAAAUGUUCAACUGCUCUGAAGGGGCUGAAUGAAAAUGGCCUUUCUGAACAUCCAUUU--------ACAUUAAAUAU--------UG
.(((((((.(((((((((.....(((((((........((((((.(...........).)))))))))))))))))..--------.))))))))))--------)) ( -20.90)
>oryCun1.scaffold_215179 59410 93 - 62759
GUGAUGUCAUGAUGAUGGGCCAAAUGUUCAACUGCUCUGAAUGGGCUGAAUGAAAAUAGCCUUUCUGAACAUCC------------ACAUUGAAUGUAUGC--UAUG
(((((((((.((....((((......((((...((((.....))))....))))....)))).)))).)))).)------------)).............--.... ( -19.90)
>canFam2.chr21 44003873 97 + 54024781
GUGAUGUUAUGAUGACAGGCAAAAUGUUCAACUGCUCUGAAUGGGCUGAAUGAAAGUAGCCUUUCUGAACAUCCAUCUAAAUGUAAAAGUUAACCAU----------
(.((((((.....((.((((......((((...((((.....))))....))))....)))).))..))))))).......................---------- ( -19.80)
>dasNov1.scaffold_2894 17567 95 - 85457
AUGAUGUUAUGAUGAUGGGCAAAAUGUUCAACUGCUCUGAAUGGGCUGAAUGAAAGCAGCCUUUCUGAACAUCCAUCC--------ACAUUAAAUUAGGCUGU----
.((((((...((((.(((((.....)))))..((.((.(((.((((((........))))))))).)).))..)))).--------))))))...........---- ( -22.70)
>rn4.chr8 116925422 78 + 129041809
AUGAUGUUGUGAUGAUGGGCAAAAUGUUCAACUGCUCUGAAUGGGCUGAAUGAAAGUAGCCUUUCUGAACAUCUGUGU-----------------------------
..((((((..((....((((......((((...((((.....))))....))))....)))).))..)))))).....----------------------------- ( -19.30)
>echTel1.scaffold_316886 81342 91 + 105239
GGGAUGUUAUGAUGACAGGCAAAUUGUUCAACUGCUCUGAAUAGGAUGAGUGAAAAUGGCCUUUCUGAACAUCCAUGU--------ACAUUAAAGAUUG--------
.(((((((.....((.((((......((((.((..(((.....)))..))))))....)))).))..)))))))....--------.............-------- ( -21.80)
>consensus
AUGAUGUUAUGAUGAUGGGCAAAAUGUUCAACUGCUCUGAAUGGGCUGAAUGAAAAUAGCCUUUCUGAACAUCCAUCU________ACAUUAAAUAU__________
..((((((.....((.((((......((((...((((.....))))....))))....)))).))..)))))).................................. (-17.72 = -18.00 +   0.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Nov 24 16:48:59 2006